# *  This code was used in the following articles:
# *  [1] Learning 3-D Scene Structure from a Single Still Image, 
# *      Ashutosh Saxena, Min Sun, Andrew Y. Ng, 
# *      In ICCV workshop on 3D Representation for Recognition (3dRR-07), 2007.
# *      (best paper)
# *  [2] 3-D Reconstruction from Sparse Views using Monocular Vision, 
# *      Ashutosh Saxena, Min Sun, Andrew Y. Ng, 
# *      In ICCV workshop on Virtual Representations and Modeling 
# *      of Large-scale environments (VRML), 2007. 
# *  [3] 3-D Depth Reconstruction from a Single Still Image, 
# *      Ashutosh Saxena, Sung H. Chung, Andrew Y. Ng. 
# *      International Journal of Computer Vision (IJCV), Aug 2007. 
# *  [6] Learning Depth from Single Monocular Images, 
# *      Ashutosh Saxena, Sung H. Chung, Andrew Y. Ng. 
# *      In Neural Information Processing Systems (NIPS) 18, 2005.
# *
# *  These articles are available at:
# *  http://make3d.stanford.edu/publications
# * 
# *  We request that you cite the papers [1], [3] and [6] in any of
# *  your reports that uses this code. 
# *  Further, if you use the code in image3dstiching/ (multiple image version),
# *  then please cite [2].
# *  
# *  If you use the code in third_party/, then PLEASE CITE and follow the
# *  LICENSE OF THE CORRESPONDING THIRD PARTY CODE.
# *
# *  Finally, this code is for non-commercial use only.  For further 
# *  information and to obtain a copy of the license, see 
# *
# *  http://make3d.stanford.edu/publications/code
# *
# *  Also, the software distributed under the License is distributed on an 
# * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either 
# *  express or implied.   See the License for the specific language governing 
# *  permissions and limitations under the License.
# *
# */
#!/bin/bash

# Change to the submission directory
cd $PBS_O_WORKDIR

# Run the m-file
matlab -nojvm -nodisplay > PairListModel$Task.out << EOF

% Run your MATLAB commands inlin
cd ..
image3dstichingSetPath
Fdir ='/afs/cs/group/reconstruction3d/scratch/TestMultipleImage/$Task';

% process the List
if true%$PairListFlag
	echo "Using $PairList";
	List = [];
	% read in file from $PairList
	fp = fopen(['./Batch/' $PairList],'r');
	tline = 1;	
	while tline ~= -1
		tline = fgetl(fp);
		id = strfind(tline,' ');
		List = [ List; { tline(1:( id-1 )), tline(id:end)} ];
	end
%        List = [ List; {  'IMG_0892', 'IMG_0895' }];
%        List = [ List; {  'IMG_0892', 'IMG_0896' }];
%        List = [ List; {  'IMG_0866', 'IMG_0867' }];
else
	file = dir([ Fdir '/jpg/*.jpg']);
	List = [];
	for i = 1:length(file)
		for j = 1:length(file)
			if i<j
				List = [List; { strrep(file(i).name,'.jpg',''), strrep(file(j).name,'.jpg','')}];
			end
		end
	end
end

% run each List
for i = 1:size(List,1);
	WlrName = [ '$Task' '_' List{i,1} '_' List{i,2}];
	
	PairList = [];
	PairList = [ PairList; {List{i,1},List{i,2}}];

	%FlagSetup;

	FlagSetupTestPairNew;
	% ======= Flag Changes
	Flag.FlagImgInfoLoadPreStorage = 3;
	Flag.PoseMatches = 1;
	Flag.ReInference = 1;
	Flag.Refinement = 0;

	% Refinement
	Flag.FlagPreloadOccluDetectMatches = 0;
	Flag.LoadStoragedSurfOccluMatches = 0;
	Flag.FlagPreloadOccluDetectRay = 0;
	Flag.LoadCorrMatches = 0;
	% ====================


	Stiching3dParameterSetup;
	% ======= Parameter Changes ======
	defaultPara.AbsThre = $AbsThre;
	defaultPara.RatioThre = $RatioThre;
	% ================================
	tic;
	main( Fdir, PairList, WlrName, defaultPara);
	toc;
end

cd Batch/;

% Exit MATLAB
exit
EOF

# Display the output
cat PairListModel$Task.out

